A series of ImageJ plugins to run z stack imaging processing faster. These are two FIJI (ImageJ) plugins I used to automate part of the image processing I needed with some confocal microscopy images.

ImageJ is an open source image processing program designed for scientific multidimensional images. It was originally written in Java and available mainly on desktop computers. We compiled it into ...

3D Viewer is a plugin that enables you to display and explore your image stacks in 3D space. You can use 3D Viewer to create different types of 3D renderings, such as surface, volume, or orthoslice, ...

As someone whose background isn’t primarily in programming, jumping back into development was a challenge. It had been over 20 years since I last worked extensively in Java or C, yet here I was, ...