The data analysis workflow was built in KNIME Analytics Platform 4.5.2 with two additional modules: KNIME Python Integration and the Vernalis KNIME nodes. The workflow is fully annotated to provide ...
missed_cleavage_rate.py , tmt_labeling_efficiency.py and percent_cysteines.py are for use with the modificationSpecificPeptides.txt output file from MaxQuant from the sample quality control step ...